Team II Functional Annotation Group: Difference between revisions

From Compgenomics 2020
Jump to navigation Jump to search
Castore3 (talk | contribs)
Castore3 (talk | contribs)
Line 11: Line 11:


== '''Data Overview'''==
== '''Data Overview'''==
We received 50 fna and 50 faa files from the gene prediction group. The 50 fna files are multifasta files representing each genome. The 50 faa files are multifasta files representing each proteome.


== '''Bioinformatics Pipeline'''==
== '''Bioinformatics Pipeline'''==

Revision as of 13:01, 23 February 2020

Team 2: Functional Annotation

Team Members: Danielle Temples, Courtney Astore, Rhiya Sharma, Ujani Hazra, Sooyoun Oh

Introduction

What is functional Annotation?

Functional annotation is the practice of putting biological meaning to coding genes (genes that encode proteins) and their corresponding protein sequences. Such annotations can be derived using homology and ab initio-based approaches, which will be further explained in subsequent sections.

Homology-based approaches vs. ab initio-based approaches

Objective

Data Overview

We received 50 fna and 50 faa files from the gene prediction group. The 50 fna files are multifasta files representing each genome. The 50 faa files are multifasta files representing each proteome.

Bioinformatics Pipeline

Software

Homology-based Tools

Ab initio-based Tools

Methods

Results

Conclusions

Presentations

References