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==''' Team 1 Genome Assembly '''== | |||
=== In-Class Presentations === | |||
[[File:]] | |||
=== Genome Assembly Pipeline === | |||
[[File:workflow.png|border]] | |||
=== Our Goals === | |||
1. To perform quality control on reads before and after assembling the genome. | 1. To perform quality control on reads before and after assembling the genome. | ||
2. To evaluate the performance of assembly tools: | 2. To evaluate the performance of assembly tools: | ||
Revision as of 17:46, 29 January 2020
Team 1 Genome Assembly
In-Class Presentations
[[File:]]
Genome Assembly Pipeline
Our Goals
1. To perform quality control on reads before and after assembling the genome. 2. To evaluate the performance of assembly tools:
* Abyss * ALLPATHS-LG * SPADES * SKESA * Velvet
3. To use the best 2 to perform de novo assembly based on the 50 isolates. 4. To send off the highest quality result to gene prediction.