Team I Genome Assembly Group: Difference between revisions

Revision as of 17:42, 29 January 2020

__Genome Assembly Workflow__

__Our Goals__ 1. To perform quality control on reads before and after assembling the genome. 2. To evaluate the performance of assembly tools:

  * Abyss
  * ALLPATHS-LG
  * SPADES
  * SKESA
  * Velvet

3. To use the best 2 to perform de novo assembly based on the 50 isolates. 4. To send off the highest quality result to gene prediction.

@@ Line 1: / Line 1: @@
-**Genome Assembly Workflow**
+__Genome Assembly Workflow__
-[Workflow](http://example.com "Title")
 <gallery>
 Image:workflow.png|<Center>'''Genome Assembly Workflow'''</center>
 </gallery>
-**Our Goals**
+__Our Goals__
-To perform quality control on reads before and after assembling the genome.
+. To perform quality control on reads before and after assembling the genome.
-To evaluate the performance of assembly tools:
+. To evaluate the performance of assembly tools:
-. Abyss
+   * Abyss
-. ALLPATHS-LG
+   * ALLPATHS-LG
-. SPADES
+   * SPADES
-. SKESA
+   * SKESA
-. Velvet
+   * Velvet
-To use the best 2 to perform de novo assembly based on the 50 isolates.
+. To use the best 2 to perform de novo assembly based on the 50 isolates.
-To send off the highest quality result to gene prediction.
+. To send off the highest quality result to gene prediction.