Team III Functional Annotation Group: Difference between revisions
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Created page with "Group Members - Allison, Bengu, Cheng, Pallavi Misra =='''Introduction'''== =='''Initial Pipeline'''== File: 2.PNG =='''Homology Tools'''== ===[https://blast.ncbi.nlm...." |
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=='''Initial Pipeline'''== | =='''Initial Pipeline'''== | ||
[[File: | [[File: Init pipeline.PNG]] | ||
=='''Homology Tools'''== | =='''Homology Tools'''== | ||
===[https:// | ===[https://card.mcmaster.ca/analyze/rgi '''CARD-RGI''']=== | ||
===[http:// | ===[http://www.mgc.ac.cn/VFs/main.htm '''VFDB''']=== | ||
=='''Ab-initio - Tools'''== | =='''Ab-initio - Tools'''== | ||
===[https:// | ===[https://www.drive5.com/pilercr/ '''PILERCR''']=== | ||
=='''Final Pipeline'''== | =='''Final Pipeline'''== | ||
[[File: | [[File: Final_pipeline_T3FN.PNG]] | ||
=='''Results'''== | =='''Results'''== | ||
Revision as of 19:22, 9 April 2020
Group Members - Allison, Bengu, Cheng, Pallavi Misra
Introduction
Initial Pipeline
Homology Tools
CARD-RGI
VFDB
Ab-initio - Tools
PILERCR
Final Pipeline
Results
Prodigal
$ prodigal -i contig_file -d fasta_file -f gff -o gff_file
GeneMarkS-2
$ perl gms2.pl --seq contig_file --genome-type bacteria -fnn nucl_file --output gff_file --formal gff
GeneMarkS-2
$ perl gms2.pl --seq contig_file --genome-type bacteria -fnn nucl_file --output gff_file --formal gff