Team II Gene Prediction Group: Difference between revisions

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== '''Introduction'''==
== '''Introduction'''==
===='''Our Project'''====  
===='''Our Project'''====  
''Purpose:'' Investigate an unknown outbreak pathogen using raw genome sequence data from the Centers for Disease Control and Prevention (CDC) foodborne illness surveillance outbreak investigations​


''Overall Objective:'' Identify and characterize the pathogenic organism, make recommendations for the outbreak control, and build a public webserver that automates the computational steps​
''Our Objective:'' From assembled genomes, predict genes or features using different prediction methods and evaluate selected tools on their accuracy and performance
===='''What is Gene Prediction?'''====  
===='''What is Gene Prediction?'''====  



Revision as of 14:23, 23 February 2020

Team 2: Gene Prediction

Team Members: Danielle Temples, Kara Lee​, Paarth Parekh, Shuting Lin

Introduction

Our Project

Purpose: Investigate an unknown outbreak pathogen using raw genome sequence data from the Centers for Disease Control and Prevention (CDC) foodborne illness surveillance outbreak investigations​

Overall Objective: Identify and characterize the pathogenic organism, make recommendations for the outbreak control, and build a public webserver that automates the computational steps​

Our Objective: From assembled genomes, predict genes or features using different prediction methods and evaluate selected tools on their accuracy and performance

What is Gene Prediction?

Prokaryotic Genome

Homology Methods

Ab Initio Methods

Tool Evaluation

Non-Coding RNA Methods

Final Pipeline

References