Team I Genome Assembly Group: Difference between revisions

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__Genome Assembly Workflow__
 
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Image:workflow.png|'''Genome Assembly Workflow'''
Image:workflow.png|'''Genome Assembly Workflow'''

Revision as of 17:43, 29 January 2020

  • Genome Assembly Workflow
    Genome Assembly Workflow

__Our Goals__ 1. To perform quality control on reads before and after assembling the genome. 2. To evaluate the performance of assembly tools: 

  * Abyss
  * ALLPATHS-LG
  * SPADES
  * SKESA
  * Velvet

3. To use the best 2 to perform de novo assembly based on the 50 isolates. 4. To send off the highest quality result to gene prediction.

Retrieved from "https://compgenomics2020.biosci.gatech.edu/index.php?title=Team_I_Genome_Assembly_Group&oldid=252"